Don't let yourself be frightened by the nonsense some people spread on the internet. Flaxseed (just as legumes, most of which also contain significant amounts of cyanogenic glycosides) have been a staple food among certain cultures for thousands of years and held in high regard for their health-promoting properties.
First of all, the amount of cyanogenic glycosides in flax seeds is very low. That makes them save to eat even in raw form. To pose a serious toxic risk, one would have to eat several kilograms of raw flax seed, which is probably impossible given their laxative properties...
Second, cyanogenic glycosides are only toxic if they acutely exceed the ceullular threshold of detoxification. There is no low-level or chronic, culmulative toxicity from cyanogenic glycosides. They are part of the ubiquitous phytochemical background we have evolved on, present not only in seeds but also in nuts and many fruits such as apricots or cherries.
Quite to the contrary, just as most other phytochemicals, they may have health-promoting properties in naturally occuring cocentrations. Our mitochondria express an enzyme called rhodanese that converts cyanine into the non-toxic thiocyanate. Now consider this: there is evidence that our body even maintains a pool of thiocyanate to be utilized by the immune system as a first-line defense against pathogens: There are studies showing that during infectous challenge on the oral mucosa, the concentration of thiocyanate in saliva reaches levels several times higher than before. The thiocyanate is then enzymatically oxidized to hypothiocyanite, which exerts strong antibiotic and antiviral effects.
Thus, a regular dietary intake of foods containing low, non-toxic amounts of cyanogenic glycosides may actually provide you with an vital substrate for your immune system - not only to fight pathogens but possibly also cancer cells: as you may have surmised, thiocyanate is closely related to the isothiocynates found in cruciferous vegetables and shares some of their anti-cancer properties. It is your body's own broccoli 
Edited by timar, 06 December 2016 - 09:51 AM.