Love the image HDW, but then I'm a big infograph person to begin with.
I have to say that when all is said and done, I think epigenetic reprogramming is going to end up at the top of a more pyramidal type graph. It touches on every other hallmark and ultimately it is the only one that can explain embryonic development, animal regeneration, etc. There will be a lot more to it of course.
One thing I think is changing fast is the concept that stem cells are this unique, specific set of cells that just sit there waiting to regenerate. The new model should be more about "stemness" in which almost any cell can exhibit stemness given the right gene expression and circumstances. This is a hugely important shift in mindset because it means we no longer have to go searching endlessly for stem cells. We can reprogram somatic cells in vivo. In animal regeneration, there is almost never a stem cell niche that does the job of creating a whole new limb or retina. Rather all kinds of somatic cells are de-differentiated to do the job.
So the new idea that is just coming into view is that of opening up chromatin so that genes that do the job of de-differentiation and regeneration can be temporarily expressed in order to renew tissues. I'm not sure stem cells are even needed.
Just to provide an example of this, retinal regeneration was accomplished in mice this way. Chromatin was opened up with an HDAC inhibitor (Trichostatin A). This allowed for muller glial cells to de-differentiate with some reprogramming factors. and and a whole signaling cascade allowed for retinal regeneration. Adult mice should not be able to do this, but as many studies are showing us, most vertebrate animals have basically the same set of genes but they are expressed differently.
My point is that at the end of the day this may end up being much simpler than it seems right now. After all, it's silly to think that millions of stochastic processes coordinate horizontally to grow a new human. It has to be a top-down programming process. If it were my map I would just add a section for removing epigenetic marks, or whatever terminology expresses that best. That has to be done before reprogramming factors can start the tissue regeneration process.